Commit e6c7e898 authored by Lucianna's avatar Lucianna

Docs update, file restructuring, added aminoAlphabet

parent bd0ab2f6
......@@ -3,7 +3,9 @@
# Module for mapping an arbitrary piece of mRNA to a predetermined list of
# weights. Also contains utilities for editing said predetermined list.
#
# Author email: foul-fortune-feline@pm.me
# Author: Lucianna Osucha (email:lucianna@vulpinedesigns.com)
**Contents:**
-*mapAIC.py* Main end user program
......
......@@ -2,11 +2,11 @@
#
# Reads weights from a file, maps them to codons in arbitrary strings of mRNA
#
# Author email: foul-fortune-feline@pm.me
# Author: Lucianna Osucha (email:lucianna@vulpinedesigns.com)
import sys
sys.path.append('../')
from problem_domain.mRNA import *
from util.mRNA import *
from struct import *
......
......@@ -2,7 +2,7 @@
#
# Utility for editing the codonWeights.dat file
#
# Author Email: foul-fortune-feline@pm.me
# Author: Lucianna Osucha (email:lucianna@vulpinedesigns.com)
import sys
......
# AminoAcids.py
#
# Utils for dealing with Amino Acid Chains
#
# Authored by:
# Coauthored by: Lucianna Osucha (email:lucianna@vulpinedesigns.com)
const aminoAlphabet = "KNKNIIMIRSRSTTTT*Y*YLFLF*CWCSSSSEDEDVVVVGGGGAAAAQHQHLLLLRRRRPPPP"
class AminoAcidChain:
def __init__(self,seq:str):
self.sequence:str = seq
self.length:int = len(seq)
self.postTranslationalModificationSites:list[tuple] = []
\ No newline at end of file
# util
#
# Collection of utilities for general use in the INITIATOR_SET module of the
# GUESS
#
# Authorship:
# -Lucianna Osucha (lucianna@vulpinedesigns.com)
**Contents:**
-*mRNA.py* Utils for dealing with strands of mRNA
-*AminoAcids.py* Utils for dealing with chains of Amino Acids
# mRNA.py
#
# Representation of mRNA strand with a slew of metadata
#
# Authored by:
# Coauthored by: Lucianna Osucha (email:lucianna@vulpinedesigns.com)
class mRNA :
......
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