We need clarification of Conserved Threshold in Kozak Context and Threshold in Leaky Scanning
The GUI needs tooltips clarifying what Conserved Threshold and Threshold actually do in the Kozak and Leaky submodules. This also requires that we check the code to make sure these boxes are doing something useful (and what that something is) and that we find the paper to cite for them in the detailed paper and documentation of INITIATOR SET.